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范振鑫
作者: user -- 发布时间:2016/6/10 15:10:50

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范振鑫,副研究,博士

 

Email: zxfan@scu.edu.cn; zxfan068@foxmail.com

Office: 四川大学生命科学学院518室

 

工作经历 (Education and Work)

2003.09 - 2007.07:湖北江大学,生物技,学士 (BS, Yangtze University)

2007.09 - 2014.07:四川大学,生学,博士 (PhD, Ecology at Sichuan University)

2011.02 - 2014.01:美国加州大学洛杉分校Robert Wayne实验室,合培养 (Visiting student at Robert Wayne lab, University of California, Los Angeles)

2014.07 - 至今:四川大学生命科学学院,副研究 (Associate Professor, College of Life Science, Sichuan University)

 

研究内容 (Research)

应用二代测序的基因组、转录组、甲基化组等数据,研究濒危动物的系统发育、适应性进化、种群历史和濒危机制等问题;研究医学模式动物(猕猴)。

 

在研项目 (Grant)

1. 四川大学引进人才启动经费, 2014年7月,主持

2. 国家自然科学基金青年科学基金项目,31501871,基于血液转录组的藏酋猴免疫和糖代谢相关基因的表达研究,2016.01 2018.12,主持

3. 国家自然科学基金面上项目,31270431,Alu逆转座子及其在猕猴属动物系统进化和种群遗传学中的运用研究,2013.01 2016,参与

4. 企业横向研究项目,0020405501494,美洲大蠊研究,2015.12 2016.12,主持

5. 四川大学优秀青年学者科研基金(A类),2016SCU04A14,恒河猴与藏酋猴DNA甲基化组研究,2016 2017, 主持

 

 

文 (Publications)

2016

Song X, Shen F, Huang J, Huang Y, Du L, Wang C, Fan Z, Hou R, Yue B, Zhang X. 2016. Transcriptome-derived tetranucleotide microsatellites and their associated genes from the giant panda (Ailuropoda melanoleuca). Journal of Heredity, pii: esw024.

Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, Davis BW, Gronau I, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vilà C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Marques-Bonet T, Ostrander EA, Wayne RK, Novembre J.2016. Demographically-based evaluation of genomic regions under selection in domestic dogs. PLoS Genetics, 12(3):e1005851

Fan Z, Silva P, Gronau I, Wang S, Armero AS, Schweizer RM, Ramirez O, Pollinger J, Galaverni M, Ortega Del-Vecchyo D, Du L, Zhang W, Zhang Z, Xing J, Vilà C, Marques-Bonet T, Godinho R, Yue B, Wayne RK. 2016. Worldwide patterns of genomic variation and admixture in gray wolves. Genome Research, 26(2): 163-173.

Robinson JA, Ortega-Del Vecchyo D, Fan Z, Kim BY, vonHoldt BM, Marsden CD, Lohmueller KE, Wayne RK. 2016. Genomic Flatlining in the Endangered Island Fox. Current Biology, http://dx.doi.org/10.1016/j.cub.2016.02.062

2015

Koepfli KP, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, álvares F, Brito JC, Geffen E, Leonard JA, Helgen KM, Johnson WE, O'Brien SJ, Van Valkenburgh B, Wayne RK. 2015. Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species. Current Biology, 25(16): 2158-2165.

Du L, Li W, Fan Z, Shen F, Yang M, Wang Z, Jian Z, Hou R, Yue B, Zhang X. 2015. First insights into the giant panda (Ailuropoda melanoleuca) blood transcriptome: a resource for novel gene loci and immunogenetics. Molecular Ecology Resources, 15(4):1001-1013.

Yue H, Yan C, Tu F, Yang C, Ma W, Fan Z, Song Z, Owens J, Liu S, Zhang X. 2015. Two novel mitogenomes of Dipodidae species and phylogeny of Rodentia inferred from the complete mitogenomes. Biochemical Systematics and Ecology, 60:123-130.

Tu F*, Fan Z*, Murphy RW, Chen S, Zhang X, Yan C, Liu Y, Sun Z, Fu J, Liu S, Yue B. 2015. Molecular phylogenetic relationships among Asiatic shrewlike moles inferred from the complete mitogenomes. Journal of Zoological Systematics and Evolutionary Research, 53(2), 155-160. (*共同第一, Contributed equally)

Chen S, Sun Z, He K, Jiang X, Liu Y, Koju NP, Zhang X, Tu F, Fan Z, Liu S, Yue B. 2015. Molecular phylogenetics and phylogeographic structure of Sorex bedfordiae based on mitochondrial and nuclear DNA sequences. Molecular Phylogenetics and Evolution, 84, 245-253.

Yang MDu LLi WShen FFan Z Jian ZHou R Shen YYue BZhang X.  2015. Profile  of  microRNA  in  Giant  Panda  Blood: A  Resource  for  Immune-Related  and  Novel   microRNAs.   PLoS One.  10(11):e0143242. doi: 10.1371/journal.pone.0143242.

 

2014

Fan Z*, Zhao G*, Li P, Osada N, Xing J, Yi Y, Du L, Silva P, Wang H, Sakate R, Zhang X, Xu H, Yue B, Li J. 2014. Whole genome sequencing of Tibetan macaque (Macaca thibetana) provides new insight into the macaque evolutionary history. Molecular Biology and Evolution, 31(6), 1475-1489.

Zhang W*, Fan Z*, Han E, Hou R, Zhang L, Galaverni M, Huang J, Liu H, Silva P, Li P, Pollinger JP, Du L, Zhang X, Yue B, Wayne RK, Zhang Z. 2014. Hypoxia adaptations in the grey wolf (Canis lupus chanco) from Qinghai-Tibet Plateau. PLoS Genetics, 10(7): e1004466. doi:10.1371/journal.pgen.1004466 (*共同第一, Contributed equally)

Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, Han E, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Beale H, Ramirez O, Hormozdiari F, Alkan C, Vilà C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Ostrander EA, Marques-Bonet T, Wayne RK, Novembre J. 2014. Genome Sequencing Highlights the Dynamic Early History of Dogs. PLoS Genetics, 10(1): e1004016.

 

2012

Fan Z*, Liu S*, Liu Y, Liao L, Zhang X, Yue B. 2012. Phylogeography of the South China Field Mouse (Apodemus draco) on the southeastern Tibetan Plateau reveals high genetic diversity and glacial refugia. PLoS ONE, 7(5): e38184. doi:10.1371/journal.pone.0038184

Yue H*, Fan Z*, Liu S, Liu Y, Song Z, Zhang X. 2012. A Mitogenome of the Chevrier’s Field Mouse (Apodemus chevrieri) and genetic variations inferred from the cytochrome b gene. DNA and Cell Biology, 31(4), 460-469. (*共同第一, Contributed equally)

Tu F, Fan Z, Chen S, Yin Y, Li P, Zhang X, Liu S, Yue B. 2012. The complete mitochondrial genome sequence of the Gracile shrew mole, Uropsilus gracilis (Soricomorha: Talpidae). Mitochondrial DNA, 23, 382-384.

Chen S, Liu S, Liu Y, He K, Chen W, Zhang X, Fan Z, Tu F, Jia X, Yue B. 2012. Molecular phylogeny of Asiatic Short-Tailed Shrews, genus Blarinella Thomas, 1911 (Mammalia: Soricomorpha: Soricidae) and its taxonomic implications. Zootaxa, 3250, 43-53.

Liu S, Liu Y, Guo P, Sun Z, Murphy RW, Fan Z, Fu J, Zhang Y. 2012. Phylogeny of oriental voles (Rodentia: Muridae: Arvicolinae): molecular and morphological evidence. Zoological Science, 29, 610-622.

 

2011

Fan Z*, Liu S*, Liu Y, Zhang X, Yue B. 2011. How Quaternary geologic and climatic events in the southeastern margin of the Tibetan Plateau influence the genetic structure of small mammals: inferences from phylogeography of two rodents, Neodon irene and Apodemus latronum. Genetica, 139, 339-351.

Fan L*, Fan Z*, Yue H, Zhang X, Liu Y, Sun Z, Liu S, Yue B. 2011. Complete mitochondrial genome sequence of the Chinese Scrub vole (Neodon irene). Mitochondrial DNA, 22(3), 50-52. (*共同第一, Contributed equally)

Li W, Zhang X, Fan Z, Yue B, Huang F, King E, Ran J. 2011. Structural characteristics and phylogenetic analysis of the mitochondrial genome of the Sugarcane Borer, Diatraea saccharalis (Lepidoptera: Crambidae). DNA and Cell Biology, 30(1), 3-8.

 

2010

Meng Y, He L, Wu A, Fan Z, Ran J, Yue B, Li J. 2010. Complete mitochondrial genome of Tetraophasis szechenyii Madarasz, 1885 (Aves: Galliformes: Phasianidae), and its genetic variation as inferred from the mitochondrial DNA control region. Journal of Natural History, 44, 2955-2964.

 

2009

Fan Z*, Liu S*, Liu Y, Zeng B, Zhang X, Guo C, Yue B. 2009. Molecular phylogeny and taxonomic reconsideration of the subfamily Zapodinae (Rodentia, Dipodidae), with an emphasis on Chinese species. Molecular Phylogenetics and Evolution, 51, 447-453.

 

 


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